Software and supporting material for "SOAPdenovo2: An empirically improved memory-efficient short read de novo assembly"

R Luo, B Liu, Y Xie & Z Li
SOAPdenovo2 is the latest de novo genome assembly package from BGI's SOAP (short oligonucleotide analysis package) suite of tools (homepage here: http://soap.genomics.org.cn/). Compared to SOAPdenovo1, this new version has the advantage of a new algorithm design that reduces memory consumption in graph construction, resolves more repeat regions in contig assembly, increases coverage and length in scaffold construction, improves gap closure, and is optimized for large genomes. Using new sequencing data from the YH (Homo sapiens)...
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